STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimklaRibosomal modification protein rimK-like family member A. (401 aa)    
Predicted Functional Partners:
nat8l
N-acetyltransferase 8-like.
     
 0.951
aspa
Aspartoacylase.
     
  0.900
ogdh
Oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide).
   
 0.871
idh3a
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.860
LOC103466577
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.860
idh3b
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.860
idh3g
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.860
cs
Citrate synthase; Belongs to the citrate synthase family.
    
 0.857
nags
N-acetylglutamate synthase.
    
 0.855
gatb
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
    
 0.853
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.