STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asb14Ankyrin repeat and SOCS box containing 14a. (590 aa)    
Predicted Functional Partners:
LOC103469085
Fleer.
    
 0.558
asb4
Ankyrin repeat and SOCS box containing 4.
  
 
0.507
ift81
Intraflagellar transport 81 homolog.
    
 0.493
ANKRD34A
Ankyrin repeat domain 34A.
  
     0.482
commd1
Copper metabolism (Murr1) domain containing 1.
    
 0.477
ift88
Intraflagellar transport 88 homolog.
   
 0.466
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
   
 0.460
rel
REL proto-oncogene, NF-kB subunit.
   
 0.460
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.460
LOC103480184
V-rel avian reticuloendotheliosis viral oncogene homolog A.
   
 0.460
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.