STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfsf13bTNF superfamily member 13b; Belongs to the tumor necrosis factor family. (260 aa)    
Predicted Functional Partners:
tnfrsf13b
TACI-CRD2 domain-containing protein.
    
 0.939
tnfsf12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
   
 0.821
LOC103471589
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 
 0.815
tnfsf11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.803
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.774
tnfrsf18
CD40 molecule, TNF receptor superfamily member 5.
   
 0.708
tnfrsf11a
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
     
 0.682
LOC103464471
Tumor necrosis factor receptor superfamily, member 1B.
   
 
 0.644
LOC103481612
ADP-ribosylation factor 2b.
     
 0.629
LOC103468661
Mitogen-activated protein kinase kinase kinase 14a.
     
 0.629
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.