STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475806Activating transcription factor 5a. (505 aa)    
Predicted Functional Partners:
ENSPREP00000012259
CCAAT enhancer binding protein gamma.
   
 0.610
ddit3
DNA-damage-inducible transcript 3.
  
 0.594
asns
Asparagine synthetase [glutamine-hydrolyzing].
   
 
 0.501
plekhn1
Pleckstrin homology domain containing, family N member 1.
  
     0.493
xbp1
X-box binding protein 1.
   
 
 0.490
LOC103478067
Si:dkeyp-69b9.6.
  
 
   0.475
LOC103478466
Si:ch211-261d7.3.
  
     0.455
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
     
 0.448
LOC103467753
CCAAT enhancer binding protein beta.
   
 0.431
batf
Basic leucine zipper transcription factor, ATF-like.
    
 0.422
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.