STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdm16Si:ch211-263k4.2. (1399 aa)    
Predicted Functional Partners:
LOC103467753
CCAAT enhancer binding protein beta.
    
 0.710
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
    
 0.649
LOC103467726
RAD21 cohesin complex component like 1.
    
 0.603
aff1
Uncharacterized protein.
   
 0.590
ENSPREP00000016704
Uncharacterized protein.
    
 
0.589
Znf516
Uncharacterized protein.
    
 
0.589
arhgef16
Rho guanine nucleotide exchange factor (GEF) 16.
 
 
  
 0.574
setbp1
SET binding protein 1.
   
 0.571
LOC103467277
G protein-coupled receptor 153.
   
 
 0.567
espn
Espin.
    
 0.559
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.