STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcg4ATP-binding cassette, sub-family G (WHITE), member 4a. (649 aa)    
Predicted Functional Partners:
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5.
   
0.839
amn
Amnion associated transmembrane protein.
      
 0.674
LOC103474828
Apolipoprotein A-Ib.
   
 0.573
LOC103470288
Transcobalamin II.
   
  
 0.549
cubn
Cubilin (intrinsic factor-cobalamin receptor).
      
 0.541
LOC103477850
Uncharacterized protein.
   
 0.524
LOC103477849
Uncharacterized protein.
   
 0.524
cdca8
Cell division cycle associated 8.
   
 
 0.478
atp5f1c
ATP synthase subunit gamma.
   
   0.475
LOC103464796
ATP-binding cassette, sub-family C (CFTR/MRP), member 6a.
   
 0.472
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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