pagr1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pagr1

PAXIP1 associated glutamate-rich protein 1. (277 aa)

Predicted Functional Partners:

LOC103475798

0.854

kdm6a

0.854

rbbp5

0.847

LOC103467472

0.845

ash2l

0.840

wdr5

0.813

LOC103475867

0.801

kdm6b

0.801

paxip1

0.792

mdc1

0.792

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103467472	LOC103475798	ENSPREP00000027241	ENSPREP00000014271	Nuclear receptor coactivator 6.	Lysine (K)-specific demethylase 6A, like.	0.874
LOC103467472	LOC103475867	ENSPREP00000027241	ENSPREP00000002425	Nuclear receptor coactivator 6.	Lysine (K)-specific demethylase 6B, b.	0.605
LOC103467472	ash2l	ENSPREP00000027241	ENSPREP00000022292	Nuclear receptor coactivator 6.	Ash2 like, histone lysine methyltransferase complex subunit.	0.959
LOC103467472	kdm6a	ENSPREP00000027241	ENSPREP00000030520	Nuclear receptor coactivator 6.	Lysine (K)-specific demethylase 6A.	0.874
LOC103467472	kdm6b	ENSPREP00000027241	ENSPREP00000021959	Nuclear receptor coactivator 6.	Lysine (K)-specific demethylase 6B, a.	0.605
LOC103467472	mdc1	ENSPREP00000027241	ENSPREP00000019394	Nuclear receptor coactivator 6.	Uncharacterized protein.	0.785
LOC103467472	pagr1	ENSPREP00000027241	ENSPREP00000034116	Nuclear receptor coactivator 6.	PAXIP1 associated glutamate-rich protein 1.	0.845
LOC103467472	paxip1	ENSPREP00000027241	ENSPREP00000017030	Nuclear receptor coactivator 6.	PAX interacting (with transcription-activation domain) protein 1.	0.785
LOC103467472	rbbp5	ENSPREP00000027241	ENSPREP00000014432	Nuclear receptor coactivator 6.	Retinoblastoma binding protein 5.	0.957
LOC103467472	wdr5	ENSPREP00000027241	ENSPREP00000032796	Nuclear receptor coactivator 6.	WD repeat domain 5.	0.904
LOC103475798	LOC103467472	ENSPREP00000014271	ENSPREP00000027241	Lysine (K)-specific demethylase 6A, like.	Nuclear receptor coactivator 6.	0.874
LOC103475798	ash2l	ENSPREP00000014271	ENSPREP00000022292	Lysine (K)-specific demethylase 6A, like.	Ash2 like, histone lysine methyltransferase complex subunit.	0.967
LOC103475798	mdc1	ENSPREP00000014271	ENSPREP00000019394	Lysine (K)-specific demethylase 6A, like.	Uncharacterized protein.	0.857
LOC103475798	pagr1	ENSPREP00000014271	ENSPREP00000034116	Lysine (K)-specific demethylase 6A, like.	PAXIP1 associated glutamate-rich protein 1.	0.854
LOC103475798	paxip1	ENSPREP00000014271	ENSPREP00000017030	Lysine (K)-specific demethylase 6A, like.	PAX interacting (with transcription-activation domain) protein 1.	0.857
LOC103475798	rbbp5	ENSPREP00000014271	ENSPREP00000014432	Lysine (K)-specific demethylase 6A, like.	Retinoblastoma binding protein 5.	0.969
LOC103475798	wdr5	ENSPREP00000014271	ENSPREP00000032796	Lysine (K)-specific demethylase 6A, like.	WD repeat domain 5.	0.802
LOC103475867	LOC103467472	ENSPREP00000002425	ENSPREP00000027241	Lysine (K)-specific demethylase 6B, b.	Nuclear receptor coactivator 6.	0.605
LOC103475867	ash2l	ENSPREP00000002425	ENSPREP00000022292	Lysine (K)-specific demethylase 6B, b.	Ash2 like, histone lysine methyltransferase complex subunit.	0.967
LOC103475867	mdc1	ENSPREP00000002425	ENSPREP00000019394	Lysine (K)-specific demethylase 6B, b.	Uncharacterized protein.	0.878