STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103481412Vitamin K epoxide reductase complex, subunit 1. (167 aa)    
Predicted Functional Partners:
ggcx
Gamma-glutamyl carboxylase.
   
 
 0.964
LOC103459381
Flavodoxin_2 domain-containing protein.
     
 0.920
LOC103459403
Flavodoxin_2 domain-containing protein.
     
 0.920
vkorc1l1
Vitamin K epoxide reductase complex, subunit 1-like 1.
  
  
 
0.902
dclre1a
DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).
   
  
 0.646
trpt1
tRNA phosphotransferase 1.
   
  
 0.625
pitx1
Homeobox protein.
      
 0.623
pros1
Protein S.
   
  
 0.550
thyn1
Thymocyte nuclear protein 1.
      
 0.549
epha3
Eph receptor A3.
      
 0.535
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.