ZNF821 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZNF821

Zinc finger protein 821. (547 aa)

Predicted Functional Partners:

trmt61a

0.557

atxn1l

0.555

trmt6

0.537

txnl4b

0.506

dhx38

0.486

ncapd2

0.407

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ZNF821	atxn1l	ENSPREP00000034291	ENSPREP00000034293	Zinc finger protein 821.	Ataxin 1-like.	0.555
ZNF821	dhx38	ENSPREP00000034291	ENSPREP00000034266	Zinc finger protein 821.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.486
ZNF821	ncapd2	ENSPREP00000034291	ENSPREP00000016021	Zinc finger protein 821.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.407
ZNF821	trmt6	ENSPREP00000034291	ENSPREP00000024084	Zinc finger protein 821.	tRNA methyltransferase 6.	0.537
ZNF821	trmt61a	ENSPREP00000034291	ENSPREP00000007755	Zinc finger protein 821.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.557
ZNF821	txnl4b	ENSPREP00000034291	ENSPREP00000032194	Zinc finger protein 821.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.506
atxn1l	ZNF821	ENSPREP00000034293	ENSPREP00000034291	Ataxin 1-like.	Zinc finger protein 821.	0.555
dhx38	ZNF821	ENSPREP00000034266	ENSPREP00000034291	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	Zinc finger protein 821.	0.486
dhx38	trmt6	ENSPREP00000034266	ENSPREP00000024084	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	tRNA methyltransferase 6.	0.431
dhx38	txnl4b	ENSPREP00000034266	ENSPREP00000032194	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.519
ncapd2	ZNF821	ENSPREP00000016021	ENSPREP00000034291	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Zinc finger protein 821.	0.407
ncapd2	trmt6	ENSPREP00000016021	ENSPREP00000024084	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	tRNA methyltransferase 6.	0.422
trmt6	ZNF821	ENSPREP00000024084	ENSPREP00000034291	tRNA methyltransferase 6.	Zinc finger protein 821.	0.537
trmt6	dhx38	ENSPREP00000024084	ENSPREP00000034266	tRNA methyltransferase 6.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.431
trmt6	ncapd2	ENSPREP00000024084	ENSPREP00000016021	tRNA methyltransferase 6.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.422
trmt6	trmt61a	ENSPREP00000024084	ENSPREP00000007755	tRNA methyltransferase 6.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.999
trmt61a	ZNF821	ENSPREP00000007755	ENSPREP00000034291	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	Zinc finger protein 821.	0.557
trmt61a	trmt6	ENSPREP00000007755	ENSPREP00000024084	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	tRNA methyltransferase 6.	0.999
txnl4b	ZNF821	ENSPREP00000032194	ENSPREP00000034291	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	Zinc finger protein 821.	0.506
txnl4b	dhx38	ENSPREP00000032194	ENSPREP00000034266	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.519