STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102225037Si:ch211-256e16.3. (621 aa)    
Predicted Functional Partners:
bbs1
Bardet-Biedl syndrome 1.
    
 0.676
bbs9
Bardet-Biedl syndrome 9.
    
 0.672
bbs4
Bardet-Biedl syndrome 4.
    
 0.660
bbs7
Bardet-Biedl syndrome 7.
   
 0.641
ttc8
Tetratricopeptide repeat domain 8.
    
 0.629
Sqstm1
Uncharacterized protein.
    
 0.574
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.567
LOC102221121
Cullin 3; Belongs to the cullin family.
    
 0.528
LOC102235624
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.528
Cul1
Cullin 1b; Belongs to the cullin family.
    
 0.510
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.