STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102235407Anoctamin. (775 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
      
 0.485
LOC102235145
Plakophilin 3b.
   
  
 0.429
CPNE8
Copine 8.
   
  
 0.421
LOC102221087
Copine VIII.
   
  
 0.421
cd81
Tetraspanin.
      
 0.414
ENSXMAP00000038034
Uncharacterized protein.
      
 0.414
tbc1d15
TBC1 domain family, member 15.
      
 0.412
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.412
LOC102226580
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
      
 0.412
zfc3h1
zf-C3H1 domain-containing protein.
      
 0.412
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.