STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dekDEK proto-oncogene. (395 aa)    
Predicted Functional Partners:
LOC102235710
Uncharacterized protein.
    
 
 0.863
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.863
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.855
mybbp1a
MYB binding protein (P160) 1a.
     
 0.801
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
    
 0.779
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.748
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
     
 0.747
ercc6
Excision repair cross-complementation group 6.
    
 0.713
srrm1
Serine/arginine repetitive matrix 1.
    
 
 0.667
rnps1
RNA binding protein S1, serine-rich domain.
   
  
 0.649
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.