STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fitm2Fat storage inducing transmembrane protein 2. (255 aa)    
Predicted Functional Partners:
sqle
Squalene epoxidase a.
   
 
 0.580
msmo1
Methylsterol monooxygenase 1; Belongs to the sterol desaturase family.
      
 0.560
slc49a4
Solute carrier family 49 member 4.
      
 0.556
srebf2
Sterol regulatory element binding transcription factor 2.
      
 0.510
dhcr7
7-dehydrocholesterol reductase.
    
 
 0.509
ch25h
Cholesterol 25-hydroxylase; Belongs to the sterol desaturase family.
      
 0.504
hif1an
Hypoxia inducible factor 1 subunit alpha inhibitor.
      
 0.477
M3ZLR1_XIPMA
Uncharacterized protein.
      
 0.450
mttp
Microsomal triglyceride transfer protein.
      
 0.410
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
      
 0.410
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.