STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102225993Desumoylating isopeptidase 1a. (168 aa)    
Predicted Functional Partners:
psmd12
Proteasome 26S subunit, non-ATPase 12.
   
   0.855
psmc4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
   
   0.852
psmc3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
   
   0.852
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
   
   0.852
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
    
   0.851
psma5
Proteasome subunit alpha type.
    
   0.851
psmd8
Proteasome 26S subunit, non-ATPase 8.
    
   0.851
psma4
Proteasome subunit beta; Belongs to the peptidase T1B family.
    
   0.851
bag6
BCL2 associated athanogene 6.
    
   0.851
psmb1
Proteasome subunit beta.
    
   0.851
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.