STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaf12DDB1 and CUL4 associated factor 12. (483 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.940
dcaf5
Ddb1 and cul4 associated factor 5.
      
 0.634
dcaf6
Ddb1 and cul4 associated factor 6.
      
 0.621
cct5
Chaperonin containing TCP1, subunit 5 (epsilon).
    
 
 0.615
dcaf4
WD repeat domain 21.
      
 0.525
drosha
Uncharacterized protein.
      
 0.487
WDR37
WD repeat domain 37.
      
 0.485
LOC102226007
WD repeat domain 37.
      
 0.485
cul4b
Cullin 4B; Belongs to the cullin family.
    
 
 0.461
cul4a
Cullin 4A; Belongs to the cullin family.
    
 
 0.461
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.