rbm27 protein (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rbm27

RNA binding motif protein 27. (1047 aa)

Predicted Functional Partners:

zfc3h1

0.714

pabpn1

0.566

PABPN1L

0.566

mtrex

0.527

rnps1

0.481

skiv2l

0.451

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PABPN1L	mtrex	ENSXMAP00000036254	ENSXMAP00000004851	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Mtr4 exosome RNA helicase.	0.535
PABPN1L	pabpn1	ENSXMAP00000036254	ENSXMAP00000006219	Poly(A) binding protein nuclear 1 like, cytoplasmic.	Poly(A) binding protein, nuclear 1.	0.905
PABPN1L	rbm27	ENSXMAP00000036254	ENSXMAP00000001438	Poly(A) binding protein nuclear 1 like, cytoplasmic.	RNA binding motif protein 27.	0.566
PABPN1L	zfc3h1	ENSXMAP00000036254	ENSXMAP00000036259	Poly(A) binding protein nuclear 1 like, cytoplasmic.	zf-C3H1 domain-containing protein.	0.593
mtrex	PABPN1L	ENSXMAP00000004851	ENSXMAP00000036254	Mtr4 exosome RNA helicase.	Poly(A) binding protein nuclear 1 like, cytoplasmic.	0.535
mtrex	pabpn1	ENSXMAP00000004851	ENSXMAP00000006219	Mtr4 exosome RNA helicase.	Poly(A) binding protein, nuclear 1.	0.535
mtrex	rbm27	ENSXMAP00000004851	ENSXMAP00000001438	Mtr4 exosome RNA helicase.	RNA binding motif protein 27.	0.527
mtrex	rnps1	ENSXMAP00000004851	ENSXMAP00000004834	Mtr4 exosome RNA helicase.	RNA binding protein S1, serine-rich domain.	0.481
mtrex	zfc3h1	ENSXMAP00000004851	ENSXMAP00000036259	Mtr4 exosome RNA helicase.	zf-C3H1 domain-containing protein.	0.952
pabpn1	PABPN1L	ENSXMAP00000006219	ENSXMAP00000036254	Poly(A) binding protein, nuclear 1.	Poly(A) binding protein nuclear 1 like, cytoplasmic.	0.905
pabpn1	mtrex	ENSXMAP00000006219	ENSXMAP00000004851	Poly(A) binding protein, nuclear 1.	Mtr4 exosome RNA helicase.	0.535
pabpn1	rbm27	ENSXMAP00000006219	ENSXMAP00000001438	Poly(A) binding protein, nuclear 1.	RNA binding motif protein 27.	0.566
pabpn1	zfc3h1	ENSXMAP00000006219	ENSXMAP00000036259	Poly(A) binding protein, nuclear 1.	zf-C3H1 domain-containing protein.	0.657
rbm27	PABPN1L	ENSXMAP00000001438	ENSXMAP00000036254	RNA binding motif protein 27.	Poly(A) binding protein nuclear 1 like, cytoplasmic.	0.566
rbm27	mtrex	ENSXMAP00000001438	ENSXMAP00000004851	RNA binding motif protein 27.	Mtr4 exosome RNA helicase.	0.527
rbm27	pabpn1	ENSXMAP00000001438	ENSXMAP00000006219	RNA binding motif protein 27.	Poly(A) binding protein, nuclear 1.	0.566
rbm27	rnps1	ENSXMAP00000001438	ENSXMAP00000004834	RNA binding motif protein 27.	RNA binding protein S1, serine-rich domain.	0.481
rbm27	skiv2l	ENSXMAP00000001438	ENSXMAP00000014150	RNA binding motif protein 27.	SKI2 homolog, superkiller viralicidic activity 2-like.	0.451
rbm27	zfc3h1	ENSXMAP00000001438	ENSXMAP00000036259	RNA binding motif protein 27.	zf-C3H1 domain-containing protein.	0.714
rnps1	mtrex	ENSXMAP00000004834	ENSXMAP00000004851	RNA binding protein S1, serine-rich domain.	Mtr4 exosome RNA helicase.	0.481