STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102235820Si:ch211-269e2.1. (1177 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.979
LOC102220833
Structural maintenance of chromosomes protein.
   
 0.974
smc1a
Structural maintenance of chromosomes protein.
   
 0.974
rad21
RAD21 cohesin complex component a.
   
 0.963
LOC102238282
RAD21 cohesin complex component b.
   
 0.963
M4AUE5_XIPMA
Rad21_Rec8_N domain-containing protein.
   
 0.963
espl1
Extra spindle pole bodies like 1, separase.
    
 0.961
pds5b
PDS5 cohesin associated factor B.
   
 0.868
pds5a
PDS5 cohesin associated factor A.
   
 0.868
LOC102237791
Nipped-B protein.
   
 0.819
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.