STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102225357Synaptotagmin-like 2b. (1622 aa)    
Predicted Functional Partners:
LOC102229808
RAB27B, member RAS oncogene family.
   
 
 0.783
ENSXMAP00000020627
SH3 domain-containing protein.
     
 0.573
ENSXMAP00000022108
Uncharacterized protein.
     
 0.573
ENSXMAP00000024852
EH domain-containing protein.
     
 0.573
LOC102223116
Intersectin 2a.
     
 0.573
ENSXMAP00000026072
Uncharacterized protein.
     
 0.573
LOC102232710
Uncharacterized protein.
   
 
 0.524
rab27a
RAB27A, member RAS oncogene family.
   
 
 0.524
ENSXMAP00000020527
C2 domain-containing protein.
     
 0.521
ENSXMAP00000023381
PDZ domain-containing protein.
     
 0.521
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.