STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rft1Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family. (541 aa)    
Predicted Functional Partners:
alg1
ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase.
   
 
 0.718
alg2
ALG2 alpha-1,3/1,6-mannosyltransferase.
   
 
 0.669
LOC102226133
Zgc:92907.
      
 0.611
LOC102220637
Uncharacterized protein.
   
 
 0.587
LOC102230403
ALG11 alpha-1,2-mannosyltransferase.
   
 
 0.587
tor3a
Torsin family 3, member A.
      
 0.577
rbm28
RNA binding motif protein 28.
      
 0.561
LOC102233370
Uncharacterized protein.
      
 0.560
acp1
LMWPc domain-containing protein.
      
 0.529
mrps18a
Mitochondrial ribosomal protein S18A.
      
 0.487
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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