STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUF60Poly-U binding splicing factor b. (552 aa)    
Predicted Functional Partners:
LOC102237828
Uncharacterized protein.
  
  
 
0.901
sf3a2
Splicing factor 3a, subunit 2.
   
 0.797
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.778
sf3b3
Splicing factor 3b, subunit 3.
    
 0.768
sf3b1
Splicing factor 3b, subunit 1.
   
 0.740
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.733
sf3a1
Splicing factor 3a, subunit 1.
   
 0.712
fubp1
Far upstream element (FUSE) binding protein 1.
   
 
 0.709
khsrp
KH-type splicing regulatory protein.
   
 
 0.709
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.704
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.