STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102218622Sorbin and SH3 domain containing 3. (700 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.804
LOC102222474
Vinculin a.
   
 0.782
vcl
Vinculin b.
   
 0.782
erbb3
Protein kinase domain-containing protein.
    
 0.682
lgi3
Leucine-rich repeat LGI family, member 3.
     
 0.635
gch1
GTP cyclohydrolase 1.
    
   0.562
LOC111609824
GTP cyclohydrolase 2.
    
   0.562
LOC102238093
GTP_cyclohydroI domain-containing protein.
    
   0.562
ncf4
Neutrophil cytosolic factor 4.
   
0.523
ncf1
Neutrophil cytosolic factor 1.
   
 0.523
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.