STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102219653AT rich interactive domain 5A (MRF1-like). (589 aa)    
Predicted Functional Partners:
sap30l
Sap30-like.
    
 0.697
rbbp4
Retinoblastoma binding protein 4.
    
 0.601
LOC102223381
CAP-ZIP_m domain-containing protein.
   
  
 0.598
hdac9
Histone deacetylase 9b.
    
 0.577
actl6a
Actin-like 6A; Belongs to the actin family.
    
 
 0.555
scmh1
SAM domain-containing protein.
   
  
 0.533
LOC102224277
Retinoblastoma binding protein 4, like.
    
 0.508
arid4a
AT rich interactive domain 4A (RBP1-like).
   
0.504
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
     
 0.503
pcgf5
Polycomb group ring finger 5a.
      
 0.499
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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