STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102236904Stomatin. (293 aa)    
Predicted Functional Partners:
LOC102234420
BC1 (ubiquinol-cytochrome c reductase) synthesis-like; Belongs to the AAA ATPase family.
   
 0.614
LOC102227118
YME1-like 1b.
   
 0.614
yme1l1
YME1-like 1a.
   
 0.614
afg3l2
AFG3-like AAA ATPase 2.
   
 0.614
LOC102225895
AAA domain-containing protein.
   
 0.614
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
   
 0.614
c1qbp
Complement component 1, q subcomponent binding protein.
   
 0.567
rnf141
Ring finger protein 141.
      
 0.560
srd5a2
3-oxo-5-alpha-steroid 4-dehydrogenase; Converts testosterone into 5-alpha-dihydrotestosterone and progesterone or corticosterone into their corresponding 5-alpha-3- oxosteroids. It plays a central role in sexual differentiation and androgen physiology.
      
 0.487
gtpbp6
GTP binding protein 6 (putative).
  
  
 0.476
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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