STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102221241ATP-binding cassette, sub-family A (ABC1), member 4a. (2175 aa)    
Predicted Functional Partners:
LOC102232437
Paralemmin 1b.
      
 0.690
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.587
LOC106699636
Uncharacterized protein.
   
 0.531
LOC102232016
Uncharacterized protein.
   
 0.531
LOC102220007
Apolipoprotein A-Ib.
     
 0.417
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
    
 0.413
M4AE11_XIPMA
Nuclear receptor subfamily 1, group H, member 5.
    
 0.413
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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