Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102236488Uncharacterized protein. (757 aa)    
Predicted Functional Partners:
mgat4a
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A.
     
 0.920
mgat4b
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B.
     
 0.920
mgat4c
Mgat4 family member C.
     
 0.919
MGAT4C
MGAT4 family member C.
     
 0.919
LOC102218707
Uncharacterized protein.
     
 0.918
LOC102220492
Uncharacterized protein.
     
 0.916
LOC102235305
Peptidase S72 domain-containing protein.
    
 0.508
dag1
Dystroglycan 1.
    
 0.508
scel
LIM zinc-binding domain-containing protein.
   
 0.425
nme9
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.410
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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