STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102224882Si:dkey-208k4.2. (368 aa)    
Predicted Functional Partners:
GTF3C1
General transcription factor IIIC subunit 1.
    
 0.763
bdp1
SANT domain-containing protein.
    
 0.700
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 
 0.649
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.600
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.583
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 
 0.569
LOC102233808
BRF1 RNA polymerase III transcription initiation factor subunit b.
   
 
 0.567
LOC102220698
TFIIB-type domain-containing protein.
   
 
 0.567
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
    
 0.558
gtf3c5
General transcription factor IIIC, polypeptide 5.
    
 0.548
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.