LOC102219996 protein (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102219996

Regulator of G protein signaling 1. (190 aa)

Predicted Functional Partners:

cct5

0.585

pde6g

0.581

apc2

0.549

ENSXMAP00000041150

0.549

gnb5

0.547

LOC102225716

0.547

LOC102225297

0.547

gnb1

0.547

GNB4

0.547

gnb3

0.547

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000041150	LOC102219996	ENSXMAP00000041150	ENSXMAP00000002718	APC_N_CC domain-containing protein.	Regulator of G protein signaling 1.	0.549
GNB4	LOC102219996	ENSXMAP00000028537	ENSXMAP00000002718	G protein subunit beta 4.	Regulator of G protein signaling 1.	0.547
GNB4	LOC102225297	ENSXMAP00000028537	ENSXMAP00000018276	G protein subunit beta 4.	Guanine nucleotide binding protein (G protein), beta 5b.	0.405
GNB4	cct5	ENSXMAP00000028537	ENSXMAP00000019231	G protein subunit beta 4.	Chaperonin containing TCP1, subunit 5 (epsilon).	0.754
GNB4	gnb5	ENSXMAP00000028537	ENSXMAP00000006765	G protein subunit beta 4.	Guanine nucleotide binding protein (G protein), beta 5a.	0.403
GNB4	pde6g	ENSXMAP00000028537	ENSXMAP00000016724	G protein subunit beta 4.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.413
LOC102219996	ENSXMAP00000041150	ENSXMAP00000002718	ENSXMAP00000041150	Regulator of G protein signaling 1.	APC_N_CC domain-containing protein.	0.549
LOC102219996	GNB4	ENSXMAP00000002718	ENSXMAP00000028537	Regulator of G protein signaling 1.	G protein subunit beta 4.	0.547
LOC102219996	LOC102225297	ENSXMAP00000002718	ENSXMAP00000018276	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), beta 5b.	0.547
LOC102219996	LOC102225716	ENSXMAP00000002718	ENSXMAP00000012077	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.547
LOC102219996	apc2	ENSXMAP00000002718	ENSXMAP00000032932	Regulator of G protein signaling 1.	APC regulator of WNT signaling pathway 2.	0.549
LOC102219996	cct5	ENSXMAP00000002718	ENSXMAP00000019231	Regulator of G protein signaling 1.	Chaperonin containing TCP1, subunit 5 (epsilon).	0.585
LOC102219996	gnb1	ENSXMAP00000002718	ENSXMAP00000019438	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.547
LOC102219996	gnb3	ENSXMAP00000002718	ENSXMAP00000028856	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.547
LOC102219996	gnb5	ENSXMAP00000002718	ENSXMAP00000006765	Regulator of G protein signaling 1.	Guanine nucleotide binding protein (G protein), beta 5a.	0.547
LOC102219996	pde6g	ENSXMAP00000002718	ENSXMAP00000016724	Regulator of G protein signaling 1.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.581
LOC102225297	GNB4	ENSXMAP00000018276	ENSXMAP00000028537	Guanine nucleotide binding protein (G protein), beta 5b.	G protein subunit beta 4.	0.405
LOC102225297	LOC102219996	ENSXMAP00000018276	ENSXMAP00000002718	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G protein signaling 1.	0.547
LOC102225297	LOC102225716	ENSXMAP00000018276	ENSXMAP00000012077	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.404
LOC102225297	cct5	ENSXMAP00000018276	ENSXMAP00000019231	Guanine nucleotide binding protein (G protein), beta 5b.	Chaperonin containing TCP1, subunit 5 (epsilon).	0.933