STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
def8Differentially expressed in FDCP 8 homolog. (439 aa)    
Predicted Functional Partners:
pdcd5
Programmed cell death 5.
      
 0.802
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
      
 0.802
uvrag
UV radiation resistance associated gene.
    
 
 0.607
tcf25
Transcription factor 25 (basic helix-loop-helix).
      
 0.597
LOC102236798
SAM domain, SH3 domain and nuclear localisation signals 1a.
   
  
 0.565
znf276
Zinc finger protein 276.
      
 0.540
inpp5d
Inositol polyphosphate-5-phosphatase D.
   
  
 0.537
mvd
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
      
 0.534
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.530
becn1
Beclin 1, autophagy related.
    
 
 0.507
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.