hif1an protein (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hif1an

Hypoxia inducible factor 1 subunit alpha inhibitor. (354 aa)

Predicted Functional Partners:

LOC102223582

0.824

LOC102218651

0.824

M4ANF0_XIPMA

0.824

hif1a

0.824

trpa1

0.816

LOC102234173

0.778

LOC102233486

0.778

LOC102225103

0.706

LOC102226607

0.706

LOC102230480

0.620

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102218651	LOC102233486	ENSXMAP00000005020	ENSXMAP00000005323	Endothelial PAS domain protein 1b.	Notch receptor 1a.	0.456
LOC102218651	LOC102234173	ENSXMAP00000005020	ENSXMAP00000003326	Endothelial PAS domain protein 1b.	Notch receptor 1b.	0.456
LOC102218651	hif1an	ENSXMAP00000005020	ENSXMAP00000003073	Endothelial PAS domain protein 1b.	Hypoxia inducible factor 1 subunit alpha inhibitor.	0.824
LOC102223582	LOC102233486	ENSXMAP00000003196	ENSXMAP00000005323	Hypoxia inducible factor 1 subunit alpha, like.	Notch receptor 1a.	0.456
LOC102223582	LOC102234173	ENSXMAP00000003196	ENSXMAP00000003326	Hypoxia inducible factor 1 subunit alpha, like.	Notch receptor 1b.	0.456
LOC102223582	hif1a	ENSXMAP00000003196	ENSXMAP00000021592	Hypoxia inducible factor 1 subunit alpha, like.	Hypoxia inducible factor 1 subunit alpha a.	0.908
LOC102223582	hif1an	ENSXMAP00000003196	ENSXMAP00000003073	Hypoxia inducible factor 1 subunit alpha, like.	Hypoxia inducible factor 1 subunit alpha inhibitor.	0.824
LOC102225103	hif1an	ENSXMAP00000002334	ENSXMAP00000003073	Poly [ADP-ribose] polymerase.	Hypoxia inducible factor 1 subunit alpha inhibitor.	0.706
LOC102226607	hif1an	ENSXMAP00000005033	ENSXMAP00000003073	Poly [ADP-ribose] polymerase.	Hypoxia inducible factor 1 subunit alpha inhibitor.	0.706
LOC102230480	hif1an	ENSXMAP00000010565	ENSXMAP00000003073	Zinc finger protein 503.	Hypoxia inducible factor 1 subunit alpha inhibitor.	0.620
LOC102233486	LOC102218651	ENSXMAP00000005323	ENSXMAP00000005020	Notch receptor 1a.	Endothelial PAS domain protein 1b.	0.456
LOC102233486	LOC102223582	ENSXMAP00000005323	ENSXMAP00000003196	Notch receptor 1a.	Hypoxia inducible factor 1 subunit alpha, like.	0.456
LOC102233486	M4ANF0_XIPMA	ENSXMAP00000005323	ENSXMAP00000015995	Notch receptor 1a.	Uncharacterized protein.	0.456
LOC102233486	hif1a	ENSXMAP00000005323	ENSXMAP00000021592	Notch receptor 1a.	Hypoxia inducible factor 1 subunit alpha a.	0.456
LOC102233486	hif1an	ENSXMAP00000005323	ENSXMAP00000003073	Notch receptor 1a.	Hypoxia inducible factor 1 subunit alpha inhibitor.	0.778
LOC102234173	LOC102218651	ENSXMAP00000003326	ENSXMAP00000005020	Notch receptor 1b.	Endothelial PAS domain protein 1b.	0.456
LOC102234173	LOC102223582	ENSXMAP00000003326	ENSXMAP00000003196	Notch receptor 1b.	Hypoxia inducible factor 1 subunit alpha, like.	0.456
LOC102234173	M4ANF0_XIPMA	ENSXMAP00000003326	ENSXMAP00000015995	Notch receptor 1b.	Uncharacterized protein.	0.456
LOC102234173	hif1a	ENSXMAP00000003326	ENSXMAP00000021592	Notch receptor 1b.	Hypoxia inducible factor 1 subunit alpha a.	0.456
LOC102234173	hif1an	ENSXMAP00000003326	ENSXMAP00000003073	Notch receptor 1b.	Hypoxia inducible factor 1 subunit alpha inhibitor.	0.778