STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irf8Interferon regulatory factor 8. (412 aa)    
Predicted Functional Partners:
LOC102228257
Interferon regulatory factor.
   
0.566
pbdc1
Polysaccharide biosynthesis domain containing 1.
      
 0.532
tardbp
TAR DNA binding protein, like.
    
 
 0.498
LOC102220505
TAR DNA binding protein.
    
 
 0.498
LOC102219145
Cytochrome b-245, alpha polypeptide.
   
 
 0.491
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.488
cdc25b
Rhodanese domain-containing protein.
   
 0.471
M3ZRR6_XIPMA
Uncharacterized protein.
    
 0.464
mpeg1
Macrophage expressed 1, tandem duplicate 2.
   
  
 0.457
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
   
  
 0.455
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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