STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102225730Retinal outer segment membrane protein 1b. (361 aa)    
Predicted Functional Partners:
LOC102217011
Retinal outer segment membrane protein 1a.
  
  
0.879
LOC102237909
Uncharacterized protein.
  
 
0.722
LOC102224915
Peripherin 2-like a.
  
 
0.721
LOC102221265
Peripherin 2b (retinal degeneration, slow).
  
 
0.721
prph2
Peripherin 2a (retinal degeneration, slow).
  
 
0.721
pax6
Paired box 6b.
      
 0.672
grk7
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
   
  
 0.647
LOC102218539
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  
 0.610
LOC102236489
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.569
LOC102234430
Retinal G protein coupled receptor a; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
      
 0.560
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
Server load: medium (56%) [HD]