STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102229919ISL LIM homeobox 2a. (422 aa)    
Predicted Functional Partners:
LHX3
LIM homeobox 3.
   
0.763
lhx4
LIM homeobox 4.
   
0.763
LOC102226528
LIM-domain binding 1b.
    
 0.663
LOC102234841
LIM domain binding 1a.
    
 0.663
ldb2
LIM domain binding 2a.
    
 0.663
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.481
nkx2-5
NK2 homeobox 5.
    
 
 0.408
M4AZP2_XIPMA
Achaete-scute family bHLH transcription factor 1b.
   
 0.408
ptf1a
Pancreas associated transcription factor 1a.
   
 0.403
barx1
BARX homeobox 1.
   
 
 0.400
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.