STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TINAGL1Tubulointerstitial nephritis antigen like 1; Belongs to the peptidase C1 family. (474 aa)    
Predicted Functional Partners:
fam83b
Family with sequence similarity 83 member B.
      
 0.690
pef1
Penta-EF-hand domain containing 1.
      
 0.690
hspg2
Heparan sulfate proteoglycan 2.
   
 
 0.516
LOC102234104
Neuropeptide FF receptor 1 like 2; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.502
agrn
Agrin.
   
 
 0.449
mrm1
Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).
      
 0.416
tmem59
Transmembrane protein 59.
      
 0.410
LOC102222387
Galactose-3-O-sulfotransferase 4.
      
 0.406
prdx3
Peroxiredoxin 3.
      
 0.405
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.