STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gm2aGM2 ganglioside activator. (203 aa)    
Predicted Functional Partners:
hexb
Beta-hexosaminidase.
    
 0.708
LOC102229320
Beta-hexosaminidase.
    
 0.708
fam149b1
Family with sequence similarity 149 member B1.
    
 0.676
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
   
  
 0.624
etfa
Electron transfer flavoprotein subunit alpha.
      
 0.596
galns
Galactosamine (N-acetyl)-6-sulfatase.
   
  
 0.563
ENSXMAP00000021594
CDK5 regulatory subunit associated protein 2.
      
 0.560
cln3
Battenin.
      
 0.499
LOC102227949
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.487
OSBPL8
Oxysterol-binding protein; Belongs to the OSBP family.
      
 0.487
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.