STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr2e1Nuclear receptor subfamily 2, group E, member 1. (397 aa)    
Predicted Functional Partners:
rere
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.571
LOC102228837
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.571
atn1
Atrophin 1.
    
 0.571
ncor1
Nuclear receptor corepressor 1.
    
 0.564
ncor2
Nuclear receptor corepressor 2.
    
 0.564
med1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
  0.561
pard6g
Par-6 family cell polarity regulator gamma b.
    
 
 0.502
sobp
Sine oculis binding protein homolog (Drosophila) a.
      
 0.496
LOC102226142
Eph receptor B3a.
    
 0.490
ccdc40
Coiled-coil domain containing 40.
   
 
 0.469
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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