klhl38 protein (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

klhl38

Kelch-like family member 38a. (583 aa)

Predicted Functional Partners:

dusp27

0.860

LOC102224285

0.690

Sqstm1

0.686

LOC102221121

0.599

LOC102235624

0.599

Cul1

0.574

Col9a1

0.568

bbs9

0.564

myo18b

0.540

rbx1

0.516

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Col9a1	LOC102224285	ENSXMAP00000009609	ENSXMAP00000013860	Uncharacterized protein.	Formin-like 1a.	0.652
Col9a1	Sqstm1	ENSXMAP00000009609	ENSXMAP00000022354	Uncharacterized protein.	Uncharacterized protein.	0.567
Col9a1	dusp27	ENSXMAP00000009609	ENSXMAP00000006378	Uncharacterized protein.	Dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.596
Col9a1	klhl38	ENSXMAP00000009609	ENSXMAP00000003346	Uncharacterized protein.	Kelch-like family member 38a.	0.568
Col9a1	myo18b	ENSXMAP00000009609	ENSXMAP00000000637	Uncharacterized protein.	Myosin XVIIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.439
Cul1	LOC102221121	ENSXMAP00000034019	ENSXMAP00000011032	Cullin 1b; Belongs to the cullin family.	Cullin 3; Belongs to the cullin family.	0.680
Cul1	LOC102235624	ENSXMAP00000034019	ENSXMAP00000015204	Cullin 1b; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.680
Cul1	Sqstm1	ENSXMAP00000034019	ENSXMAP00000022354	Cullin 1b; Belongs to the cullin family.	Uncharacterized protein.	0.652
Cul1	klhl38	ENSXMAP00000034019	ENSXMAP00000003346	Cullin 1b; Belongs to the cullin family.	Kelch-like family member 38a.	0.574
Cul1	rbx1	ENSXMAP00000034019	ENSXMAP00000029000	Cullin 1b; Belongs to the cullin family.	Ring-box 1, E3 ubiquitin protein ligase.	0.999
LOC102221121	Cul1	ENSXMAP00000011032	ENSXMAP00000034019	Cullin 3; Belongs to the cullin family.	Cullin 1b; Belongs to the cullin family.	0.680
LOC102221121	LOC102235624	ENSXMAP00000011032	ENSXMAP00000015204	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.900
LOC102221121	Sqstm1	ENSXMAP00000011032	ENSXMAP00000022354	Cullin 3; Belongs to the cullin family.	Uncharacterized protein.	0.751
LOC102221121	klhl38	ENSXMAP00000011032	ENSXMAP00000003346	Cullin 3; Belongs to the cullin family.	Kelch-like family member 38a.	0.599
LOC102221121	rbx1	ENSXMAP00000011032	ENSXMAP00000029000	Cullin 3; Belongs to the cullin family.	Ring-box 1, E3 ubiquitin protein ligase.	0.970
LOC102224285	Col9a1	ENSXMAP00000013860	ENSXMAP00000009609	Formin-like 1a.	Uncharacterized protein.	0.652
LOC102224285	Sqstm1	ENSXMAP00000013860	ENSXMAP00000022354	Formin-like 1a.	Uncharacterized protein.	0.530
LOC102224285	dusp27	ENSXMAP00000013860	ENSXMAP00000006378	Formin-like 1a.	Dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.690
LOC102224285	klhl38	ENSXMAP00000013860	ENSXMAP00000003346	Formin-like 1a.	Kelch-like family member 38a.	0.690
LOC102224285	myo18b	ENSXMAP00000013860	ENSXMAP00000000637	Formin-like 1a.	Myosin XVIIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.630