STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnf1aHNF1 homeobox a. (560 aa)    
Predicted Functional Partners:
hnf1b
HNF1 homeobox Ba.
  
 
0.767
LOC102224628
Pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha.
    
 
 0.745
PCBD2
Pterin-4 alpha-carbinolamine dehydratase 2.
    
 
 0.745
hnf4a
Hepatocyte nuclear factor 4, alpha.
   
 0.670
LOC102230280
Hepatocyte nuclear factor 4, gamma.
   
 0.670
pdx1
Pancreatic and duodenal homeobox 1.
   
  
 0.651
LOC102238342
Forkhead box A3.
   
 
 0.622
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
  
 0.591
srebf1
Sterol regulatory element binding transcription factor 1.
      
 0.560
M3ZDA1_XIPMA
KN motif and ankyrin repeat domains 2.
      
 0.524
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.