STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neflNeurofilament, light polypeptide b; Belongs to the intermediate filament family. (558 aa)    
Predicted Functional Partners:
LOC102233488
Actinin, alpha 1.
   
 0.708
LOC102234547
Actinin, alpha 2b.
   
 0.609
actn3
Actinin alpha 3b.
   
 0.609
LOC102232517
Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.
   
 0.503
LOC102220646
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 0.503
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.502
ENSXMAP00000027936
Asp_Arg_Hydrox domain-containing protein.
   
 
 0.472
ENSXMAP00000033306
Asp-B-Hydro_N domain-containing protein.
   
 
 0.472
M4AZC4_XIPMA
Uncharacterized protein.
   
  0.471
LOC102218189
ZP domain-containing protein.
   
 0.457
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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