STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102220528Synemin, intermediate filament protein; Belongs to the intermediate filament family. (1003 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.772
LOC102216572
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
0.621
zyx
Zyxin.
     
 0.569
LOC102218559
RAN binding protein 2.
    
 0.554
LOC102222474
Vinculin a.
     
 0.498
vcl
Vinculin b.
     
 0.498
M3ZT51_XIPMA
TROVE domain-containing protein.
   
 0.484
rbbp5
Retinoblastoma binding protein 5.
    
 0.450
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.450
LOC102220386
Lysine (K)-specific demethylase 6A, like.
    
 0.441
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.