LOC102228294 protein (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102228294

G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (384 aa)

Predicted Functional Partners:

prlh

0.922

LOC102223162

0.718

LOC102222266

0.714

srxn1

0.618

LOC102221683

0.560

SAMD8

0.560

grid2

0.503

LOC102222210

0.499

pnoc

0.482

LOC102229500

0.467

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102221683	LOC102222210	ENSXMAP00000010409	ENSXMAP00000035283	SAM domain-containing protein.	AP-3 complex subunit mu-1; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes; Belongs to the adaptor complexes medium subunit family.	0.560
LOC102221683	LOC102228294	ENSXMAP00000010409	ENSXMAP00000004091	SAM domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.560
LOC102222210	LOC102221683	ENSXMAP00000035283	ENSXMAP00000010409	AP-3 complex subunit mu-1; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes; Belongs to the adaptor complexes medium subunit family.	SAM domain-containing protein.	0.560
LOC102222210	LOC102228294	ENSXMAP00000035283	ENSXMAP00000004091	AP-3 complex subunit mu-1; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes; Belongs to the adaptor complexes medium subunit family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.499
LOC102222210	SAMD8	ENSXMAP00000035283	ENSXMAP00000023994	AP-3 complex subunit mu-1; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes; Belongs to the adaptor complexes medium subunit family.	Sterile alpha motif domain containing 8.	0.560
LOC102222266	LOC102223162	ENSXMAP00000027343	ENSXMAP00000041249	Neuropeptide Y.	Peptide YYa.	0.559
LOC102222266	LOC102228294	ENSXMAP00000027343	ENSXMAP00000004091	Neuropeptide Y.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.714
LOC102222266	LOC102229500	ENSXMAP00000027343	ENSXMAP00000031355	Neuropeptide Y.	Uncharacterized protein.	0.711
LOC102222266	pnoc	ENSXMAP00000027343	ENSXMAP00000011659	Neuropeptide Y.	Prepronociceptin a.	0.635
LOC102223162	LOC102222266	ENSXMAP00000041249	ENSXMAP00000027343	Peptide YYa.	Neuropeptide Y.	0.559
LOC102223162	LOC102228294	ENSXMAP00000041249	ENSXMAP00000004091	Peptide YYa.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.718
LOC102223162	LOC102229500	ENSXMAP00000041249	ENSXMAP00000031355	Peptide YYa.	Uncharacterized protein.	0.791
LOC102223162	pnoc	ENSXMAP00000041249	ENSXMAP00000011659	Peptide YYa.	Prepronociceptin a.	0.616
LOC102228294	LOC102221683	ENSXMAP00000004091	ENSXMAP00000010409	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	SAM domain-containing protein.	0.560
LOC102228294	LOC102222210	ENSXMAP00000004091	ENSXMAP00000035283	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	AP-3 complex subunit mu-1; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes; Belongs to the adaptor complexes medium subunit family.	0.499
LOC102228294	LOC102222266	ENSXMAP00000004091	ENSXMAP00000027343	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Neuropeptide Y.	0.714
LOC102228294	LOC102223162	ENSXMAP00000004091	ENSXMAP00000041249	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Peptide YYa.	0.718
LOC102228294	LOC102229500	ENSXMAP00000004091	ENSXMAP00000031355	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.467
LOC102228294	SAMD8	ENSXMAP00000004091	ENSXMAP00000023994	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Sterile alpha motif domain containing 8.	0.560
LOC102228294	grid2	ENSXMAP00000004091	ENSXMAP00000024403	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Glutamate receptor, ionotropic, delta 2.	0.503