STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm28RNA binding motif protein 28. (753 aa)    
Predicted Functional Partners:
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.990
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.988
ddx27
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.
   
 0.987
gtpbp4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.982
rrp12
Ribosomal RNA processing 12 homolog.
   
 
 0.982
LOC102235001
Pumilio RNA-binding family member 3.
   
 
 0.980
ebna1bp2
EBNA1 binding protein 2.
   
 
 0.980
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.979
rbm34
RNA binding motif protein 34.
   
 
 0.978
rsl1d1
Ribosomal L1 domain containing 1.
   
 
 0.975
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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