STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102216494Uncharacterized protein. (282 aa)    
Predicted Functional Partners:
LOC102227794
Leucine rich repeat containing 4.1.
      
 0.690
rbm28
RNA binding motif protein 28.
      
 0.653
LOC102238301
Leucine rich repeat containing 4.2.
      
 0.652
LOC102224458
Uncharacterized protein.
   
  
 0.412
LOC102223291
Protein tyrosine phosphatase receptor type Na.
   
  
 0.412
M3ZFP1_XIPMA
SH3 and SYLF domain containing 1.
      
 0.400
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.