STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102222523Family with sequence similarity 78 member Ba. (285 aa)    
Predicted Functional Partners:
wdr43
WD repeat domain 43.
   
 0.562
utp20
UTP20 small subunit processome component.
   
 0.546
utp4
UTP4 small subunit processome component.
    
 0.520
utp15
UTP15 small subunit processome component.
   
 0.511
wdr75
WD repeat domain 75.
   
  0.503
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.502
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
  0.494
rps7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
 0.493
fcf1
FCF1 rRNA-processing protein.
   
  0.493
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.493
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
Server load: medium (66%) [HD]