STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpn13Tyrosine-protein phosphatase non-receptor type 13; Regulates negatively FAS-induced apoptosis and NGFR-mediated pro-apoptotic signaling. (2385 aa)    
Predicted Functional Partners:
NUP54
Nucleoporin 54.
   
  
 0.690
rapgef6
Rap guanine nucleotide exchange factor (GEF) 6.
    
 0.621
plekha2
Si:ch211-204d2.4.
    
 0.601
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 
 0.600
LOC102219146
Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b.
    
  0.583
apc2
APC regulator of WNT signaling pathway 2.
   
 
 0.538
ENSXMAP00000041150
APC_N_CC domain-containing protein.
   
 
 0.538
LOC102232209
Uncharacterized protein.
   
 
 0.526
shoc2
SHOC2 leucine rich repeat scaffold protein.
    
 0.479
pick1
Protein interacting with prkca 1.
    
 0.478
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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