STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102227384HERPUD family member 2. (327 aa)    
Predicted Functional Partners:
LOC102232234
Activating transcription factor 4a.
   
 
 0.510
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.465
amfr
Autocrine motility factor receptor b.
   
 
 0.459
LOC102223838
Activating transcription factor 4b.
   
 
 0.428
tyro3
TYRO3 protein tyrosine kinase.
      
 0.408
oip5
Mis18 domain-containing protein.
      
 0.408
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.