STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102228859High mobility group nucleosome binding domain 6. (97 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
LOC102219960
Ribosomal protein L26.
  
 0.993
rpl31
Ribosomal protein L31.
  
 0.993
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.993
rpl30
Ribosomal protein L30.
   
 0.993
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 0.993
rpl6
Ribosomal protein L6.
   
 0.993
rpl32
Ribosomal protein L32.
   
 0.993
rpl14
Ribosomal protein L14.
   
 0.992
rpl35a
Ribosomal protein L35a.
   
 0.992
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.