STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmlheTrimethyllysine hydroxylase, epsilon. (407 aa)    
Predicted Functional Partners:
cryl1
Crystallin, lambda 1.
  
 
 0.675
hadh
Hydroxyacyl-CoA dehydrogenase.
  
 
 0.675
LOC102238072
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.667
LOC102216575
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.667
aifm2
Apoptosis inducing factor mitochondria associated 2.
      
 0.652
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
      
 0.643
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
  
 0.593
cep57l1
Centrosomal protein 57, like 1.
      
 0.560
LOC102225933
Threonine aldolase 1.
      
 0.560
agmat
Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.
   
 
  0.507
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.