STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102216372Matrix metallopeptidase 15a. (683 aa)    
Predicted Functional Partners:
ENSXMAP00000025895
CCAAT/enhancer binding protein (C/EBP) 1.
      
 0.690
ccni
Cyclin I; Belongs to the cyclin family.
      
 0.623
timp2
TIMP metallopeptidase inhibitor 2a.
   
 0.579
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.579
LOC102223119
TIMP metallopeptidase inhibitor 2b.
   
 0.579
LOC102227508
CCAAT enhancer binding protein beta.
   
  
 0.566
plau
Plasminogen activator, urokinase a; Belongs to the peptidase S1 family.
   
 0.529
LOC102224115
Uncharacterized protein.
   
 0.529
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
      
 0.521
pgr
Progesterone receptor.
    
 
 0.512
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.