STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaf17Ddb1 and cul4 associated factor 17. (507 aa)    
Predicted Functional Partners:
ube2m
Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.
     
 0.728
dda1
DET1 and DDB1 associated 1.
    
 0.727
DDA1
DET1 and DDB1 associated 1.
    
 0.727
ddb1
Damage-specific DNA binding protein 1.
    
 0.690
coasy
CoA synthase.
      
 0.690
cul4b
Cullin 4B; Belongs to the cullin family.
   
 0.658
cul4a
Cullin 4A; Belongs to the cullin family.
   
 0.658
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
     
 0.618
commd4
COMM domain containing 4.
   
 
  0.612
dcaf8
DDB1 and CUL4 associated factor 8.
     
 0.611
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.