STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102228719Mothers against decapentaplegic homolog. (503 aa)    
Predicted Functional Partners:
smad9
Mothers against decapentaplegic homolog.
   
0.979
LOC102227900
Mothers against decapentaplegic homolog.
   
0.979
smad3
Mothers against decapentaplegic homolog.
   
0.977
LOC102224322
Mothers against decapentaplegic homolog.
   
0.977
SMAD3
Mothers against decapentaplegic homolog.
   
0.977
lef1
Lymphoid enhancer-binding factor 1.
    
 0.947
LOC102234111
Transcription factor 7 like 1b.
    
 0.924
ski
V-ski avian sarcoma viral oncogene homolog a.
   
 0.924
ENSXMAP00000030259
HMG box domain-containing protein.
    
 0.924
tcf7
Transcription factor 7.
    
 0.924
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.